Faculty Research Assistant
| Office: |
Cordley 1055 |
| Email: |
howed@science.oregonstate.edu |
| Phone: |
(541) 737-9983 |
| Keywords: |
Mutation, variation, tiling array, mitochondria, nematodes, C. elegans, C. briggsae |
Research Interests:
My research examines molecular evolution processes across mutation-acclumulation
lines and natural strains of C. elegans and C. briggsae using Affymetrix
whole-genome tiling arrays. I am also exploring mitochondrial genetic variation
in natural isolates of C. briggsae.
Publications:
Mudge, J., Y. Huihuang, R. Denny, D.K. Howe, D. Danesh, L. Marek, E. Retzel,
R.C. Shoemaker, and N.D. Young. Soybean bacterial artificial chromosome
contigs anchored with RFLPs: insights into genome duplication and gene
clustering. 2004. Genome 47(2): 361-372.
Yan, H.H., J. Mudge, D.J. Kim, D. Larsen, R.C. Shoemaker, D.R. Cook, and N.D.
Young. Estimates of conserved microsynteny among the genomes of Glycine
max, Medicago truncatula and Arabidopsis thaliana. 2003. Theor Appl Genet. 106(7):
1256-1265.
Foster-Hartnett, D., J. Mudge, D. Larsen, D. Danesh, H. Yan, R. Denny, S.
Penuela, and N.D. Young. Comparative genomic analysis of sequences
sampled from a small region on soybean (Glycine max) molecular linkage group G.
2002. Genome 45(4):634-645.
Marek, L.F., J. Mudge, L. Darnielle, D. Grant, N. Hanson, M. Paz, Y. Huihuang,
R. Denny, K. Larson, D. Foster-Hartnett, A. Cooper, D. Danesh, D. Larsen, T.
Schmidt, R. Staggs, J.A. Crow, E. Retzel, N.D. Young, and R.C. Shoemaker.
Soybean genomic survey: BAC-end sequences near RFLP and SSR markers. 2001. Genome Research 44(4):572-581.
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